Medical Microbiology and Immunology (Master of Science)
Pharmaceutical Sciences (Master of Science)
Translational Hearing
Cytometry
CRISS II 432
Patrick C . Swanson, PhD
Program Director, Department of Medical Microbiology and Immunology - Graduate Program
Professor
Cancer Research Focus
The products of the Recombination Activating Genes (RAG) initiate DNA double-strand breaks during V(D)J recombination, which is the process that is responsible for assembling immunoglobulin and T cell receptor genes in lymphocytes. While essential for normal development of adaptive immunity, this process is not always benign, as certain types of leukemia and lymphoma harbor aberrant DNA rearrangements that can be traced to mistakes during V(D)J recombination. A major focus of research in my laboratory to understand the regulatory mechanisms that constrain RAG activity and guide the appropriate repair of the RAG-induced DNA breaks to prevent genome instability and cancer.
Cancer Research Area(s)
Blood Cancers
Examples of the most recent publications can be obtained from this PubMed link.
Research Focus
I am generally interested in mechanisms of immune repertoire diversification. My research program is currently focused on studying various aspects of V(D)J recombination, the process by which immunoglobulin and T cell receptor genes are assembled during lymphocyte development. V(D)J recombination is initiated by the RAG1 and RAG2 proteins, which together introduce DNA breaks in the antigen receptor loci, which are subsequently repaired by components of the non-homologous DNA end-joining (NHEJ) repair pathway (Fig. 1). The laboratory has two major ongoing projects. The first project is broadly focused on how proteins that associated with the full-length RAG1 regulate V(D)J recombination by facilitating DNA end-joining or the timely degradation of RAG1. The second project involves determining whether enforced expression of catalytically inactive RAG1 in mice can impair secondary V(D)J recombination events triggered by engagement of self-antigen (receptor editing) or in response to immunization (receptor revision), and whether defects in these processes increase susceptibility to malignancy or autoimmune disease. These research projects are or have been supported by both intramural and extramural grants, including grants awarded by the National Institutes of Health and the American Cancer Society.
Reference Module in Biomedical Research Swanson Patrick C., V(D)J Recombination, Somatic Hypermutation, and Class Switch Recombination [Book Chapter] 2014
V(D)J Recombination Swanson Patrick C., Kumar Sushi, Raval Prafulla, Early steps of V(D)J rearrangement [Book Chapter] 2009
Articles
Swanson Patrick C., Erratum 2003
Publications
The Journal of immunology (1950) Palmer Victoria L, Schabla N Max, Kumar Vikas, Swanson Patrick C, RACK1 is required for normal B cell development and signaling but not RAG1 degradation 2025
Nature communications Deng Silu, Strauss-Soukup Juliane K, Belshan Michael, Chen Xian-Ming, He Wei, Gong Ai-Yu, Li Min, Wang Yang, Xia Zijie, Zhang Xin-Tiang, Huang Pacheco Andrew S, Naqib Ankur, Jenkins Mark, Swanson Patrick C, Drescher Kristen M, Cryptosporidium uses CSpV1 to activate host type I interferon and attenuate antiparasitic defenses 14:1, p. 1456 - 17 2023
Cell Reports Worth Alexandra N., Perry Greg A., Palmer Victoria L., Schabla N. Max, Fraser-Philbin Anna N., Swanson Patrick C., Receptor editing constrains development of phosphatidyl choline-specific B cells in VH12-transgenic mice 39:11 2022
PloS one Schabla N. Max, Swanson Patrick C., The CRL4VPRBP(DCAF1) E3 ubiquitin ligase directs constitutive RAG1 degradation in a non-lymphoid cell line 16:10 October 2021
Ecological Solutions and Evidence Swanson Patrick C., Restorative recreation 2:2 2021
Journal of molecular cell biology Schabla N. Max, Mondal Koushik, Swanson Patrick C., DCAF1 (VprBP) 11:9, p. 725 - 735 2019
Cellular Immunology Palmer Victoria L., Worth Alexandra N., Scott Robyn L., Perry Greg A., Yan Mei, Li Quan Zhen, Swanson Patrick C., IL10 restrains autoreactive B cells in transgenic mice expressing inactive RAG1 331, p. 110 - 120 2018
Journal of Immunology Max Schabla N., Perry Greg A., Palmer Victoria L., Swanson Patrick C., VprBP (DCAF1) regulates RAG1 expression independently of dicer by mediating RAG1 degradation 201:3, p. 930 - 939 2018
Gao Q., Gao G. F., Ally A., Yau C., Hayes D. N., Spellman P., Benz C., Stuart J. M., Wong C. K., Cibulskis C., Gabriel S. B., Gavin H., Meyerson M., Schumacher S. E., Shih J., Kucherlapati M. H., Carlsen R., Balasundaram M., Bowlby R., Brooks D., Chuah E., Dhalla N., Holt R., Jones S. J. M., Kasaian K., Mayo M., Lee D., Yussanne M., Marra M. A., Moore R. A., Mungall A. J., Mungall K., Robertson A. G., Sadeghi S., Thiessen N., Schein J. E., Sipahimalani P., Tam A., Tse K., Wong T., Berger A. C., Beroukhim R., Cherniack A. D., Kwok-Shing N., Liu W., Yiling L., Mills G. B., Jun L., Liu Y., Miller M., Akbani R., Saksena G., Voet D., Reynolds S., Thorsson V., Zhang W., Broom B. M., Hegde A. M., Zhenlin J., Kanchi R. S., Korkut A., Phillips S. M., Luna A., Nissan M. G., Ochoa A., Reznik E., Sanchez-Vega F., Sander C., Schultz N., Sheridan R., Bruijn I., Armenia J., Chakravarty D., Chatila W. K., Gao J., Gross B. E., Zhang H., Bernard B., Chambwe N., Dhankani V., Knijnenburg T., Kramer R., Rao A., Ryan M., Wang J., Weinstein J. N., Zhang J., Abeshouse A., Leinonen K., Heins Z. J., Kundra R., Konnor L., Ladanyi M., Lin P., Liang H., Ling S., Sun Y., Taylor B. S., Sumer S. O., Frazer S., Gehlenborg N., Getz G., Heiman D. I., Kim J., Lawrence M. S., Meier S., Noble M. S., Cao S., Liang W., Foltz S. M., Mutharasu G., Jayasinghe R. G., Liao W., Reynolds S. M., Wyczalkowski M. A., Yao L., Lazar A. J., Lihua Y., Sun S. Q., Chen K., Fields R. C., Wendl M. C., Tine B. A., Vij R., Chen F., Caesar-Johnson S. J., Nykter M., Shmulevich I., Ding L., Demchok J. A., Felau I., Kasapi M., Ferguson M. L., Wang Z., Hutter C. M., Sofia H. J., Tarnuzzer R., Yang L., Zenklusen J. C., Zhang J., Chudamani S., Pihl T., Liu J., Lolla L., Naresh R., Sun Q., Wan Y., Ye W., Cho J., Defreitas T., Wilkerson M. D., Parker J. S., Pinero E. M. M., Quintero-Aguilo M., Carlotti C. G., Dos Santos J. S., Kemp R., Sankarankuty A., Tirapelli D., Catto J., Mariamidze A., Drake B., Anur P., Peto M., Govindan R., Heath S., Ley T., Tine B., Westervelt P., Rubin M. A., Lee J. I., Aredes N. D., Yang I., Korst R., Rathmell W. K., Fantacone-Campbell J. L., Shriver C. D., Dipersio J., Hooke J. A., Kovatich A. J., Carey T., Haddad A., Moyer J., Peterson L., Prince M., Rozek L., Wolf G., Fong K. M., Bowman R., Agnew K., Swisher E., Creaney J., Robinson B., Godwin E. M., Kendall S., Shipman C., Bradford C., Shelley C. S., Moser C., Kendrick M., Kocher J., Kopp K., O’brien D., Nagorney D., Wolinsky Y., O’neill B. P., Patel T., Petersen G., Sloan A. E., Rose A., Giuliante F., Goodman M., Karlan B. Y., Danilova L., Hagedorn C. H., Eckman J., Harr J., Bootwalla M. S., Lai P. H., Maglinte D. T., Den Berg D. J., Weisenberger D. J., Auman J. T., Balu S., Morrison C., Schilero C., Smolenski K., Williams F., Borgia J. A., Liptay M. J., Pool M., Seder C. W., Junker K., Cheville J., Bryce A. H., Castle E., Chandan V., Copland J. A., Farnell M., Flotte T., Giama N., Malykh A., Thai H., Muto M., Raut C. P., Barnholtz-Sloan J. S., Barrett W., Devine K., Fulop J., Ostrom Q. T., Shimmel K., Birsoy K., Kucherlapati R. S., Baylin S., Cope L., Chevalier S., Mckercher G., Barnett G., Brewer C., Farver C., Naska T., Pennell N. A., Raymond D., Kang K. J., Stepa S., Hoon D., Ahn K., Beuschlein F., Borad M., Breggia A., Birrer M., Bell D., Shabunin A., Tavobilov M., Mcpherson C., Warnick R., Berkowitz R., Cramer D., Grazi G., Feltmate C., Horowitz N., Kibel A., Antenucci A., Facciolo F., Marino M., Merola R., Krijger R., Gimenez-Roqueplo A., Piché A., Alvaro D., Omberg L., Dinkin M., Manikhas G., Bragazzi M. C., Cardinale V., Carpino G., Gaudio E., Chesla D., Hoyle A. P., Bodenheimer T., Fan C., Hoadley K. A., Jefferys S. R., Jones C. D., Meng S., Mieczkowski P. A., Deyarmin B., Myers J., Tucker K., Zach L. A., Hai H., Kvecher L., Larson C., Mural R. J., Somiari S., Smallridge R., Que F., Rivera M., Roberts L., Smyrk T., Stanton M., Thompson R. H., Torbenson M., Yang J. D., Gonzalez A. M. A., Zhang L., Brimo F., Ajani J. A., Behrens C., Bondaruk J., Broaddus R., Czerniak B., Esmaeli B., Sigmund R., Knutson T., Deqin M., Milhem M., Godwin A. K., Madan R., Rosenthal H. G., Adebamowo C., Roach J., Mose L. E., Perou A. H., Perou C. M., Shi Y., Simons J. V., Skelly T., Soloway M. G., Tan D., Iacocca M., Vicha A., Zelinka T., Bennett J., Rabeno B., Swanson P., Latour M., Lacombe L., Têtu B., Logothetis C., Fujimoto J., Gershenwald J., Guo C., Meric-Bernstam F., Moran C., Ramondetta L., Rice D., Sood A., Giordano T., Adebamowo S. N., Boussioutas A., Beer D., Mes-Masson A., Saad F., Bocklage T., Landrum L., Mannel R., Laird P. W., Veluvolu U., Fan H., Hinoue T., Shen H., Zhou W., Bellair M., Chang K., Covington K., Chabot J., Bergeron A., Mcgraw M., Staugaitis S. M., Hibshoosh H., Sepulveda A., Tao S., Wang T., Potapova O., Tsao A., Tamboli P., Thompson T., Troncoso P., Wistuba I., Carter C., Haydu L., Hersey P., Jakrot V., Walker J., Moore K., Moxley K., Postier R., Zuna R., Feldman M., Valdivieso F., Dhir R., Luketich J., Donehower L. A., Creighton C. J., Dinh H., Doddapaneni H., Drummond J., Gibbs R. A., Glenn R., Hale W., Han Y., Roman-Roman S., Voronina O., Desjardins L., Mariani O., Sastre X., Stern M., Cheng F., Signoretti S., Berchuck A., Dhanasekaran R., Kakavand H., Kefford R., Cottingham S., Dubina M., Moiseenko F., Becker K., Janssen K., Slotta-Huspenina J., Abdel-Rahman M. H., Lewis L., Jianhong H., Korchina V., Lee S., Wei L., Liu X., Morgan M., Morton D., Muzny D., Mccall S., Bigner D., Lipp E., Marks J., Mclendon R., Secord A., Sharp A., Behera M., Brat D. J., Quinn M., Lee K., Long G., Mann G., Saw R., Scolyer R., Shannon K., Spillane A., Stretch J., Davis A., Aziz D., Bell S., Cebulla C. M., Duell R., Elder J. B., Hilty J., Kumar B., Lang J., Wang L., Santibanez J., Sheth M., Shinbrot E., Wang M., Wheeler D. A., Zhao F., Hess J., Appelbaum E. L., Khuri F., Chen A., Delman K., Force S., Magliocca K., Maithel S., Olson J. J., Owonikoko T., Pickens A., Al-Ahmadie H., Synott M., Thompson J., Wilmott J., Chan T. A., Ghossein R., Gopalan A., Levine D. A., Reuter V., Pilarski R., Lehman N. L., Mandt R., Nguyen P., Rai K., Schoenfield L., Senecal K., Wakely P., Hansen P., Fulton L. A., Bailey M., Cordes M. G., Fronick C. C., Fulton R. S., Kandoth C., Mardis E. R., Mclellan M. D., Meir E. G., Ramalingam S., Shin D. M., Sica G., Eijckenboom W., Gillis A., Korpershoek E., Looijenga L., Broudy T., Singer S., Singh B., Tien N. V., Mirsaidi C., Nair P., Drwiega P., Miller J., Smith J., Lechan R., Powers J., Tischler A., Grizzle W. E., Sexton K. C., Kastl A., Henderson J., Porten S., Waldmann J., Crain D., Miller C. A., Schmidt H. K., Wilson R. K., Curley E., Gardner J., Lau K., Mallery D., Morris S., Zwarthoff E. C., Oosterhuis W., Stoop H., Kessel K. E., Calatozzolo C., Cuppini L., Cuzzubbo S., Dimeco F., Kebebew E., Zaren H., Park J., Hung N. P., Linehan W. M., Metwalli A. R., Pacak K., Pinto P. A., Schiffman M., Couce M., Fassnacht M., Asa S. L., Schadendorf D., Graefen M., Huland H., Sauter G., Schlomm T., Simon R., Shelton T., Paulauskis J., Penny R., Shelton C., Sherman M., Thompson E., Yena P., Bowen J., Gastier-Foster J. M., Pollo B., Finocchiaro G., Mattei L., Perin A., Chen C., Houck J., Lohavanichbutr P., Hartmann A., Worrell R., Schmidt L. S., Vocke C. D., Wentzensen N., Yang H., Moncrieff M., Goparaju C., Melamed J., Pass H., Bathe O., Tennstedt P., Olabode O., Nelson M., Carroll P. R., Chan J. M., Disaia P., Glenn P., Kelley R. K., Ramirez N. C., Gerken M., Leraas K. M., Lichtenberg T. M., Wise L., Zmuda E., Corcoran N., Costello T., Wach S., Stoehr C., Stoehr R., Taubert H., Wullich B., Kycler W., Murawa D., Wiznerowicz M., Chung K., Chemencedji I., Botnariuc N., Caraman I., Cernat M., Clipca A., Doruc S., Gorincioi G., Mura S., Pirtac M., Simko J., Landen C. N., Phillips J., Prados M., Smith-Mccune K., Vandenberg S., Roggin K., Fehrenbach A., Kendler A., Fregnani J. H., Hovens C., Carvalho A. L., Carvalho A. C., Longatto-Filho A., Reis R. M., Scapulatempo-Neto C., Silveira H. C. S., Bubley G., Edenfield W. J., Martin J., Baudin E., Bueno R., Rienzo A., Richards W. G., Kalkanis S., Mikkelsen T., Alexopoulou I., Stancul I., Tcaciuc D., Albert M., Arnaout A., Bartlett J., Engel J., Gilbert S., Parfitt J., Carey F., Sifri S., Steele R., Jimeno A., Forgie I., Mannelli M., Carney M., Hernandez B., Campos B., Vidal D. O., Burnette A., Eschbacher J., Hermes B., Noss A., Singh R., Anderson M. L., Castro P. D., Ittmann M., Aymerich M., Noushmehr H., Scarpace L., Girard N., Campo E., Giné E., Guillermo A. L., Bang N., Hanh P. T., Rintoul R. C., Sekhon H., Thomas G., Rassl D. M., Bifulco C., Tamakawa R., Urba W., Hayward N., Timmers H., Von Deimling A., Herold-Mende C., Jungk C., Unterberg A., Bossler A., Galbraith J., Jacobus L., Knudson M., Thorp R., Huntsman D., Kohl B., Xuan L., Andry C., Duffy E. R., Lyadov V., Paklina O., Setdikova G., Evason K., Phu B. D., Tang Y., Colman H., Dottino P. R., Martignetti J. A., Gabra H., Juhl H., Akeredolu T., Driver Fusions and Their Implications in the Development and Treatment of Human Cancers 23:1, p. 227 - 238.e3 2018
FASEB journal : official publication of the Federation of American Societies for Experimental Biology Ma Shibin, Gong Ai-Yu, Ming Zhenping, Wang Yang, Chen Xiqiang, Zhou Rui, Hu Guoku, Chen Xian-Ming, Shibata Annemarie, Swanson Patrick C, A long non-coding RNA, lincRNA-Tnfaip3, acts as a co-regulator of NF-B to modulate inflammatory gene transcription 31:3, p. 1215 - 1225 2017
Cell Reports Haney Staci L., Klinkebiel David, Swanson Patrick, Opavsky Rene, Upchurch G. Michael, Opavska Jana, Hlady Ryan A., Suresh Abhinav, Pirruccello Samuel J., Rizzino Angie, Shukla Vipul, Lu Runqing, Costinean Stefan, Karpf Adam R., Joshi Shantaram, Promoter Hypomethylation and Expression Is Conserved in Mouse Chronic Lymphocytic Leukemia Induced by Decreased or Inactivated Dnmt3a 15:6, p. 1190 - 1201 2016
Experimental Hematology Shukla A., Pitner M. A., Rai S., Opavsky R., Swanson Patrick C., Cutucache C. E., Sutton G. L., Joshi S. S., Absence of Caveolin-1 Leads to Delayed Development of Chronic Lymphocytic Leukemia in Emu-TCL1 Mouse Model 44:1, p. 30 - 37.e1 2016
BMC Immunology Palmer Victoria L., Perry Greg A., Nganga Vincent K., Rothermund Mary, Swanson Patrick C., Cd1d regulates B cell development but not B cell accumulation and IL10 production in mice with pathologic CD5(+) B cell expansion 16:66, p. (12 pages) 2015
Journal of Immunology Palmer Victoria L., Rothermund Mary, Perry Greg A., Swanson Patrick C., Kassmeier Michele D., Aziz-Seible Razia, VprBP is required for efficient editing and selection of Igκ+ B cells, but is dispensable for Igλ+ and marginal zone B cell maturation and selection 195:4, p. 1524 - 1537 2015
Antioxidants and Redox Signaling Manning Jared, Nganga Vincent, Shakya Arvind, Pierce Laura Jean, Wang Hongfang, Swanson Patrick C., May James M., Tantin Dean, Spangrude Gerald J., Mitchell Birgitta, Appadurai Daniel A., Vitamin C promotes maturation of T-cells 19:17, p. 2054 - 2067 2013
Blood Nganga Vincent K., Perry Greg A., Palmer Victoria L., Naushad Hina, Kassmeier Michele D., Anderson Dirk K., Schabla Nathan M., Swanson Patrick C., Accelerated progression of chronic lymphocytic leukemia in Eµ-TCL1 mice expressing catalytically inactive RAG1 121:19, p. 3855 - 3866 2013
Nucleic Acids Research Wang Guannan, Chang Yung, Dhar Kajari, Swanson Patrick C., Levitus Marcia, Real-time monitoring of RAG-catalyzed DNA cleavage unveils dynamic changes in coding end association with the coding end complex 40:13, p. 6082 - 6096 2012
Molecular and Cellular Biology Shimazaki Noriko, Askary Amjad, Swanson C. Patrick, Lieber Michael R., Mechanistic basis for RAG discrimination between recombination 32:2, p. 365 - 375 2012
Journal of Proteome Research Ma Danjun, Zhao Yingchun, Xiao Gary G., Swanson Patrick C., Lappe Joan M., Cullen Diane M., Akhter Mohammed P., Recker Robert R., Hackfort Bryan, Li Yan, Smoke-Induced Signal Molecules in Bone Marrow Cells from Altered Low-Density Lipoprotein Receptor-Related Protein 5 Mice 11:7, p. 3548 - 3560 2012
The Journal of immunology (1950) Xie Wanqin, Lange Miles D, Hong Sang Yong, Huang Lin, Xue Weihua, Ding Shi-jian, Yu Yangsheng, Burrows Peter D., Lu Runqing, Swanson Patrick C., Zhang Zhixin, Su Kaihong, Jones Dallas, Yu Zhihong, He Ti, The V(D)J recombination machinery is organized as large complexes anchored on the nuclear matrix (62.1) 186:1_Supplement, p. 62 - 62.1 2011
The Journal of immunology (1950) Bai Jirong, Xie Wanqin, Lange Miles, Hong Song Yang, Huang Lin, Chan John, Su Kaihong, Swanson Patrick, McKeithan Timothy, Zhang Zhixin, Kai Fu, Ti He, Jones Dallas, Yu Zhihong, Molecular regulation of BCL2 to IGH translocation in follicular lymphoma (165.38) 186:1_Supplement, p. 165 - 165.38 2011
Immunology Hassaballa A. E., Volkmer D. L., Perry G. A., Swanson Patrick C., Palmer V. L., Parks K. W., Kassmeier M. D., Nganga V. K., Anderson D. K., Accumulation of B1-like B cells in transgenic mice over-expressing catalytically inactive RAG1 in the periphery 134:4, p. 469 - 486 2011
PLoS One Palmer V. L., Swanson Patrick C., Kassmeier M. D., Willcockson J., Akhter Mohammed P., Cullen Diane M., N-Acetylcysteine Increases the Frequency of Bone Marrow Pro-B/Pre-B Cells, but Does Not Reverse Cigarette Smoking-Induced Loss of This Subset 6:9, p. e24804 2011
EMBO Journal Kassmeier Michele D., Palmer Victoria L., Raval Prafulla, Kumar Sushil, Perry Greg A., Anderson Dirk K., Xiong Y., Jackson S., Swanson Patrick C., Ciborowski P., Mondal Koushik, VprBP binds full-length RAG1 and is required for B-cell development and V(D)J recombination fidelity 31:4, p. 945 - 958 2011
Annual Review of Genetics Schatz David G., Swanson Patrick C., V(D)J recombination 45, p. 167 - 202 2011
Inhalation Toxicology Fusby J. S., Kassmeier M. D., Palmer V. L., Perry G. A., Anderson D. K., Cullen Diane M., Akhter Mohammed P., Swanson Patrick C., Alvarez G. K., Hackfort B. T., Cigarette smoke-induced effects on bone marrow B-cell subsets and CD4(+):CD8(+) T-cell ratios are reversed by smoking cessation: Influence of bone mass on immune cell response to and recovery from smoke exposure 22:9, p. 785 - 796 2010
The Journal of immunology (1950) Swanson Patrick, Palmer Victoria, Perry Greg, Anderson Dirk, Hackfort Bryan, Alvarez Gwen, Akhter Mohammed, Cullen Diane, Kassmeier Michele, Fusby Jenny, Smoking cessation reverses cigarette smoke-induced impairment of B cell development and skewed CD4:CD8 T cell ratios in mice (36.43) 184:1_Supplement, p. 36 - 36.43 2010
The Journal of immunology (1950) Lange Miles, Xie Wanqin, Hong Sang Yong, Yu Zhihong, He Ti, Huang Lin, Yu Yangsheng, Marran-Nichol Kathleen, Swanson Patrick, Lu Runqing, Su Kaihong, Zhang Zhixin, The V(D)J recombination machinery is associated with the nuclear matrix (88.3) 184:1_Supplement, p. 88 - 88.3 2010
Journal of Biological Chemistry Shlyakhtenko Luda S., Lyubchenko Yuri L., Gilmore Jamie, Kriatchko Aleksei N., Kumar Sushil, Swanson Patrick C., Molecular mechanism underlying RAG1/RAG2 synaptic complex formation 284:31, p. 20956 - 20965 2009
Nucleic Acids Research Kumar Sushil, Swanson Patrick C., Full-length RAG1 promotes contact with coding and intersignal sequences in RAG protein complexes bound to recombination signals paired in cis 37:7, p. 2211 - 2226 2009
BMC Molecular Biology Zhang Ming, Swanson Patrick C., HMGB1/2 can target DNA for illegitimate cleavage by the RAG1/2 complex 10:1, p. 24 2009
Molecular Cell Lu Haihui, Shimazaki Noriko, Raval Prafulla, Gu Jiafeng, Watanabe Go, Schwarz Klaus, Swanson Patrick C., Lieber Michael R., A Biochemically Defined System for Coding Joint Formation in V(D)J Recombination 31:4, p. 485 - 497 2008
BMC Molecular Biology Kriatchko Aleksei N., Bergeron Serge, Swanson Patrick C., HMG-box domain stimulation of RAG1 9, p. 32 - 32 2008
Journal of Biological Chemistry Swanson Patrick C., V(D)J Recombinase Binding and Cleavage of Cryptic Recombination Signal Sequences Identified from Lymphoid Malignancies 283:11, p. 6717 - 6727 2008
Nucleic Acids Research Raval Prafulla, Swanson Patrick C., Kriatchko A. N., Kumar S., Evidence for Ku70/Ku80 association with full-length RAG1, p. 2060 - 2072 2008
Molecular and Cellular Biology Ciubotaru Mihai, Kriatchko Aleksei N., Swanson Patrick C., Bright Frank V., Schatz David G., Fluorescence resonance energy transfer analysis of recombination signal sequence configuration in the RAG1/2 synaptic complex 27:13, p. 4745 - 4758 2007
DNA Repair Raghavan Sathees C., Swanson Patrick C., Lieber Michael R., Gu Jiafeng, The structure-specific nicking of small heteroduplexes by the RAG complex 6:6, p. 751 - 759 2007
The Journal of immunology (1950) Zhang Ming, Swanson Patrick C., Recognition and cleavage of cryptic recombination signal sequences identified from lymphoid malignancies (49.20) 178:1_Supplement, p. S86 - S87 2007
The Journal of immunology (1950) Swanson Patrick C., Anderson Dirk K., Hassaballa Ashraf E., Parks Kevin W., Perry Greg A., Immunodeficiency and accumulation of B1-like B cells in transgenic mice overexpressing catalytically inactive RAG1 (B2) 178:1_Supplement, p. LB1 - LB1 2007
Molecular and Cellular Biology Kriatchko Aleksei N., Anderson Dirk K., Swanson Patrick C., Identification and characterization of a gain-of-function RAG-1 mutant 26:12, p. 4712 - 4728 2006
Methods in Enzymology Bergeron Serge, Anderson Dirk K., Swanson Patrick C., RAG and HMGB1 Proteins 408, p. 511 - 528 2006
Journal of allergy and clinical immunology Parks K.W., Hassaballa A.E., Anderson D.K., Hu Q., Casale T.B., Swanson P.C., Transgenic Mice Expressing Catalytically Inactive RAG-1 Exhibit Hypogammaglobulinemia and Altered B Cell Development, but not Autoreactivity 117:2, p. S100 - S100 2006
Journal of Biological Chemistry Bergeron Serge, Madathiparambil Tina, Swanson Patrick C., Both high mobility group (HMG)-boxes and the acidic tail of HMGB1 regulate recombination-activating gene (RAG)-mediated recombination signal synapsis and cleavage in vitro 280:35, p. 31314 - 31324 2005
Molecular and Cellular Biology Raghavan Sathees C., Ma Yunmei, Swanson Patrick C., Lieber Michael R., Double-strand break formation by the RAG complex at the Bcl-2 major breakpoint region and at other non-B DNA structures in vitro 25:14, p. 5904 - 5919 2005
Immunological Reviews Swanson Patrick C., The bounty of RAGs: recombination signal complexes and reaction outcomes 200, p. 90 - 114 2004
Nature Raghavan Sathees C., Swanson Patrick C., Wu Xlantuo, Hsieh Chih Lin, Lieber Michael R., A non-B-DNA structure at the Bcl-2 major breakpoint region is cleaved by the RAG complex 428:6978, p. 88 - 93 2004
Journal of Biological Chemistry Swanson Patrick C., Volkmer Dustin, Wang Lei, Full-length RAG-2, and Not Full-length RAG-1, Specifically Suppresses RAG-mediated Transposition but Not Hybrid Joint Formation or Disintegration 279:6, p. 4034 - 4044 2004
Molecular and Cellular Biology Swanson Patrick C., A RAG-1/RAG-2 tetramer supports 12/23-regulated synapsis, cleavage, and transposition of V(D)J recombination signals (vol 22, pg 7790, 2002) Erratum 23:8, p. 3029 - 3029 2003
Molecular and Cellular Biology Swanson Patrick C., A RAG-1/RAG/RAG-2 tetramer supports 12/23-regulated synapsis, cleavage, and transposition of V(D)J recombination signals 22:22, p. 7790 - 7801 2002
Molecular and Cellular Biology Swanson Patrick C., Fine structure and activity of discrete RAG-HMG complexes on V(D)J recombination signals 22:5, p. 1340 - 1351 2002
Molecular and Cellular Biology Swanson P. C., The DDE motif in RAG-1 is contributed in trans to a single active site that catalyzes the nicking and transesterification steps of V(D)J recombination 21:2, p. 449 - 458 2001
Molecular and Cellular Biology Swanson Patrick C., Desiderio Stephen, RAG-2 promotes heptamer occupancy by RAG-1 in the assembly of a V(D)J initiation complex 19:5, p. 3674 - 3683 1999
Immunity Swanson Patrick C., Desiderio Stephen, V(D)J recombination signal recognition 9:1, p. 115 - 125 1998
Molecular and Cellular Biology Li Wenhui, Swanson Patrick, Desiderio Stephen, RAG-1- and RAG-2-dependent assembly of functional complexes with V(D)J recombination substrates in solution 17:12, p. 6932 - 6939 1997
Journal of the American Chemical Society Stevens Shawn Y., Glick Gary D., Bunin Barry A., Plunkett Matthew J., Ellman Jonathan A., Swanson Patrick C., Non nucleic acid inhibitors of protein·DNA interactions identified through combinatorial chemistry 118:43, p. 10650 - 10651 1996
Journal of Clinical Investigation Swanson Patrick C., Yung Raymond L., Blatt Neal B., Eagan Melissa A., Norris Jennifer M., Richardson Bruce C., Johnson Kent J., Glick Gary D., Ligand recognition by murine anti-DNA autoantibodies 97:7, p. 1748 - 1760 1996
Biochemistry Swanson Patrick C., Ackroyd Christine, Glick Gary D., Ligand recognition by anti-DNA autoantibodies. Affinity, specificity, and mode of binding 35:5, p. 1624 - 1633 1996
Journal of Immunological Methods Stevens Shawn Y., Swanson Patrick C., Glick Gary D., Application of the gel shift assay to study the affinity and specificity of anti-DNA autoantibodies 177:1-2, p. 185 - 190 1994
Tetrahedron Letters Goodwin Jay T., Osborne Scott E., Swanson Patrick C., Glick Gary D., Synthesis of a disulfide cross-linked DNA triple helix 35:26, p. 4527 - 4530 1994
Journal of Immunology Swanson Patrick C., Cooper Brian C., Glick Gary D., High resolution epitope mapping of an anti-DNA autoantibody using model DNA ligands 152:5, p. 2601 - 2612 1994
Bioorganic and Medicinal Chemistry Letters Swanson Patrick C., Glick Gary D., Chemical sequencing of disulfide-crosslinked oligodeoxyribonucleotides 3:10, p. 2117 - 2118 1993
Journal of the American Chemical Society Stevens Shawn Y., Swanson Patrick C., Glick Gary D., Voss Edward W., Evidence for Induced Fit in Antibody-DNA Complexes 115:4, p. 1585 - 1586 1993