Patrick C . Swanson, PhD

Program Director, Department of Medical Microbiology and Immunology - Graduate Program

Professor

P Swanson

Contact

School of Medicine
Med Microbiology & Immunology
Graduate School
Medical Microbiology and Immunology (Doctorate)
Medical Microbiology and Immunology (Master of Science)
Pharmaceutical Sciences (Master of Science)
Translational Hearing
Cytometry
CRISS II 432

Patrick C . Swanson, PhD

Program Director, Department of Medical Microbiology and Immunology - Graduate Program

Professor

Cancer Research Focus

The products of the Recombination Activating Genes (RAG) initiate DNA double-strand breaks during V(D)J recombination, which is the process that is responsible for assembling immunoglobulin and T cell receptor genes in lymphocytes.  While essential for normal development of adaptive immunity, this process is not always benign, as certain types of leukemia and lymphoma harbor aberrant DNA rearrangements that can be traced to mistakes during V(D)J recombination.  A major focus of research in my laboratory to understand the regulatory mechanisms that constrain RAG activity and guide the appropriate repair of the RAG-induced DNA breaks to prevent genome instability and cancer.

Cancer Research Area(s)
  • Blood Cancers
Examples of the most recent publications can be obtained from this PubMed link.

Research Focus

I am generally interested in mechanisms of immune repertoire diversification.  My research program is currently focused on studying various aspects of V(D)J recombination, the process by which immunoglobulin and T cell receptor genes are assembled during lymphocyte development.  V(D)J recombination is initiated by the RAG1 and RAG2 proteins, which together introduce DNA breaks in the antigen receptor loci, which are subsequently repaired by components of the non-homologous DNA end-joining (NHEJ) repair pathway (Fig. 1).  The laboratory has two major ongoing projects.  The first project is broadly focused on how proteins that associated with the full-length RAG1 regulate V(D)J recombination by facilitating DNA end-joining or the timely degradation of RAG1.  The second project involves determining whether enforced expression of catalytically inactive RAG1 in mice can impair secondary V(D)J recombination events triggered by engagement of self-antigen (receptor editing) or in response to immunization (receptor revision), and whether defects in these processes increase susceptibility to malignancy or autoimmune disease.  These research projects are or have been supported by both intramural and extramural grants, including grants awarded by the National Institutes of Health and the American Cancer Society.

Department

Med. Microbiology & Immunology

Position

Professor

Book, Chapter/Section

  • Reference Module in Biomedical Research
    Swanson Patrick C., V(D)J Recombination, Somatic Hypermutation, and Class Switch Recombination [Book Chapter] 2014
  • V(D)J Recombination
    Swanson Patrick C., Kumar Sushi, Raval Prafulla, Early steps of V(D)J rearrangement [Book Chapter] 2009

Articles

  • Swanson Patrick C., Erratum 2003

Publications

  • The Journal of immunology (1950)
    Palmer Victoria L, Schabla N Max, Kumar Vikas, Swanson Patrick C, RACK1 is required for normal B cell development and signaling but not RAG1 degradation 2025
  • Nature communications
    Deng Silu, Strauss-Soukup Juliane K, Belshan Michael, Chen Xian-Ming, He Wei, Gong Ai-Yu, Li Min, Wang Yang, Xia Zijie, Zhang Xin-Tiang, Huang Pacheco Andrew S, Naqib Ankur, Jenkins Mark, Swanson Patrick C, Drescher Kristen M, Cryptosporidium uses CSpV1 to activate host type I interferon and attenuate antiparasitic defenses
    14:1, p. 1456 - 17 2023
  • Cell Reports
    Worth Alexandra N., Perry Greg A., Palmer Victoria L., Schabla N. Max, Fraser-Philbin Anna N., Swanson Patrick C., Receptor editing constrains development of phosphatidyl choline-specific B cells in VH12-transgenic mice
    39:11 2022
  • PloS one
    Schabla N. Max, Swanson Patrick C., The CRL4VPRBP(DCAF1) E3 ubiquitin ligase directs constitutive RAG1 degradation in a non-lymphoid cell line
    16:10 October 2021
  • Ecological Solutions and Evidence
    Swanson Patrick C., Restorative recreation
    2:2 2021
  • Journal of molecular cell biology
    Schabla N. Max, Mondal Koushik, Swanson Patrick C., DCAF1 (VprBP)
    11:9, p. 725 - 735 2019
  • Cellular Immunology
    Palmer Victoria L., Worth Alexandra N., Scott Robyn L., Perry Greg A., Yan Mei, Li Quan Zhen, Swanson Patrick C., IL10 restrains autoreactive B cells in transgenic mice expressing inactive RAG1
    331, p. 110 - 120 2018
  • Journal of Immunology
    Max Schabla N., Perry Greg A., Palmer Victoria L., Swanson Patrick C., VprBP (DCAF1) regulates RAG1 expression independently of dicer by mediating RAG1 degradation
    201:3, p. 930 - 939 2018
  • Gao Q., Gao G. F., Ally A., Yau C., Hayes D. N., Spellman P., Benz C., Stuart J. M., Wong C. K., Cibulskis C., Gabriel S. B., Gavin H., Meyerson M., Schumacher S. E., Shih J., Kucherlapati M. H., Carlsen R., Balasundaram M., Bowlby R., Brooks D., Chuah E., Dhalla N., Holt R., Jones S. J. M., Kasaian K., Mayo M., Lee D., Yussanne M., Marra M. A., Moore R. A., Mungall A. J., Mungall K., Robertson A. G., Sadeghi S., Thiessen N., Schein J. E., Sipahimalani P., Tam A., Tse K., Wong T., Berger A. C., Beroukhim R., Cherniack A. D., Kwok-Shing N., Liu W., Yiling L., Mills G. B., Jun L., Liu Y., Miller M., Akbani R., Saksena G., Voet D., Reynolds S., Thorsson V., Zhang W., Broom B. M., Hegde A. M., Zhenlin J., Kanchi R. S., Korkut A., Phillips S. M., Luna A., Nissan M. G., Ochoa A., Reznik E., Sanchez-Vega F., Sander C., Schultz N., Sheridan R., Bruijn I., Armenia J., Chakravarty D., Chatila W. K., Gao J., Gross B. E., Zhang H., Bernard B., Chambwe N., Dhankani V., Knijnenburg T., Kramer R., Rao A., Ryan M., Wang J., Weinstein J. N., Zhang J., Abeshouse A., Leinonen K., Heins Z. J., Kundra R., Konnor L., Ladanyi M., Lin P., Liang H., Ling S., Sun Y., Taylor B. S., Sumer S. O., Frazer S., Gehlenborg N., Getz G., Heiman D. I., Kim J., Lawrence M. S., Meier S., Noble M. S., Cao S., Liang W., Foltz S. M., Mutharasu G., Jayasinghe R. G., Liao W., Reynolds S. M., Wyczalkowski M. A., Yao L., Lazar A. J., Lihua Y., Sun S. Q., Chen K., Fields R. C., Wendl M. C., Tine B. A., Vij R., Chen F., Caesar-Johnson S. J., Nykter M., Shmulevich I., Ding L., Demchok J. A., Felau I., Kasapi M., Ferguson M. L., Wang Z., Hutter C. M., Sofia H. J., Tarnuzzer R., Yang L., Zenklusen J. C., Zhang J., Chudamani S., Pihl T., Liu J., Lolla L., Naresh R., Sun Q., Wan Y., Ye W., Cho J., Defreitas T., Wilkerson M. D., Parker J. S., Pinero E. M. M., Quintero-Aguilo M., Carlotti C. G., Dos Santos J. S., Kemp R., Sankarankuty A., Tirapelli D., Catto J., Mariamidze A., Drake B., Anur P., Peto M., Govindan R., Heath S., Ley T., Tine B., Westervelt P., Rubin M. A., Lee J. I., Aredes N. D., Yang I., Korst R., Rathmell W. K., Fantacone-Campbell J. L., Shriver C. D., Dipersio J., Hooke J. A., Kovatich A. J., Carey T., Haddad A., Moyer J., Peterson L., Prince M., Rozek L., Wolf G., Fong K. M., Bowman R., Agnew K., Swisher E., Creaney J., Robinson B., Godwin E. M., Kendall S., Shipman C., Bradford C., Shelley C. S., Moser C., Kendrick M., Kocher J., Kopp K., O’brien D., Nagorney D., Wolinsky Y., O’neill B. P., Patel T., Petersen G., Sloan A. E., Rose A., Giuliante F., Goodman M., Karlan B. Y., Danilova L., Hagedorn C. H., Eckman J., Harr J., Bootwalla M. S., Lai P. H., Maglinte D. T., Den Berg D. J., Weisenberger D. J., Auman J. T., Balu S., Morrison C., Schilero C., Smolenski K., Williams F., Borgia J. A., Liptay M. J., Pool M., Seder C. W., Junker K., Cheville J., Bryce A. H., Castle E., Chandan V., Copland J. A., Farnell M., Flotte T., Giama N., Malykh A., Thai H., Muto M., Raut C. P., Barnholtz-Sloan J. S., Barrett W., Devine K., Fulop J., Ostrom Q. T., Shimmel K., Birsoy K., Kucherlapati R. S., Baylin S., Cope L., Chevalier S., Mckercher G., Barnett G., Brewer C., Farver C., Naska T., Pennell N. A., Raymond D., Kang K. J., Stepa S., Hoon D., Ahn K., Beuschlein F., Borad M., Breggia A., Birrer M., Bell D., Shabunin A., Tavobilov M., Mcpherson C., Warnick R., Berkowitz R., Cramer D., Grazi G., Feltmate C., Horowitz N., Kibel A., Antenucci A., Facciolo F., Marino M., Merola R., Krijger R., Gimenez-Roqueplo A., Piché A., Alvaro D., Omberg L., Dinkin M., Manikhas G., Bragazzi M. C., Cardinale V., Carpino G., Gaudio E., Chesla D., Hoyle A. P., Bodenheimer T., Fan C., Hoadley K. A., Jefferys S. R., Jones C. D., Meng S., Mieczkowski P. A., Deyarmin B., Myers J., Tucker K., Zach L. A., Hai H., Kvecher L., Larson C., Mural R. J., Somiari S., Smallridge R., Que F., Rivera M., Roberts L., Smyrk T., Stanton M., Thompson R. H., Torbenson M., Yang J. D., Gonzalez A. M. A., Zhang L., Brimo F., Ajani J. A., Behrens C., Bondaruk J., Broaddus R., Czerniak B., Esmaeli B., Sigmund R., Knutson T., Deqin M., Milhem M., Godwin A. K., Madan R., Rosenthal H. G., Adebamowo C., Roach J., Mose L. E., Perou A. H., Perou C. M., Shi Y., Simons J. V., Skelly T., Soloway M. G., Tan D., Iacocca M., Vicha A., Zelinka T., Bennett J., Rabeno B., Swanson P., Latour M., Lacombe L., Têtu B., Logothetis C., Fujimoto J., Gershenwald J., Guo C., Meric-Bernstam F., Moran C., Ramondetta L., Rice D., Sood A., Giordano T., Adebamowo S. N., Boussioutas A., Beer D., Mes-Masson A., Saad F., Bocklage T., Landrum L., Mannel R., Laird P. W., Veluvolu U., Fan H., Hinoue T., Shen H., Zhou W., Bellair M., Chang K., Covington K., Chabot J., Bergeron A., Mcgraw M., Staugaitis S. M., Hibshoosh H., Sepulveda A., Tao S., Wang T., Potapova O., Tsao A., Tamboli P., Thompson T., Troncoso P., Wistuba I., Carter C., Haydu L., Hersey P., Jakrot V., Walker J., Moore K., Moxley K., Postier R., Zuna R., Feldman M., Valdivieso F., Dhir R., Luketich J., Donehower L. A., Creighton C. J., Dinh H., Doddapaneni H., Drummond J., Gibbs R. A., Glenn R., Hale W., Han Y., Roman-Roman S., Voronina O., Desjardins L., Mariani O., Sastre X., Stern M., Cheng F., Signoretti S., Berchuck A., Dhanasekaran R., Kakavand H., Kefford R., Cottingham S., Dubina M., Moiseenko F., Becker K., Janssen K., Slotta-Huspenina J., Abdel-Rahman M. H., Lewis L., Jianhong H., Korchina V., Lee S., Wei L., Liu X., Morgan M., Morton D., Muzny D., Mccall S., Bigner D., Lipp E., Marks J., Mclendon R., Secord A., Sharp A., Behera M., Brat D. J., Quinn M., Lee K., Long G., Mann G., Saw R., Scolyer R., Shannon K., Spillane A., Stretch J., Davis A., Aziz D., Bell S., Cebulla C. M., Duell R., Elder J. B., Hilty J., Kumar B., Lang J., Wang L., Santibanez J., Sheth M., Shinbrot E., Wang M., Wheeler D. A., Zhao F., Hess J., Appelbaum E. L., Khuri F., Chen A., Delman K., Force S., Magliocca K., Maithel S., Olson J. J., Owonikoko T., Pickens A., Al-Ahmadie H., Synott M., Thompson J., Wilmott J., Chan T. A., Ghossein R., Gopalan A., Levine D. A., Reuter V., Pilarski R., Lehman N. L., Mandt R., Nguyen P., Rai K., Schoenfield L., Senecal K., Wakely P., Hansen P., Fulton L. A., Bailey M., Cordes M. G., Fronick C. C., Fulton R. S., Kandoth C., Mardis E. R., Mclellan M. D., Meir E. G., Ramalingam S., Shin D. M., Sica G., Eijckenboom W., Gillis A., Korpershoek E., Looijenga L., Broudy T., Singer S., Singh B., Tien N. V., Mirsaidi C., Nair P., Drwiega P., Miller J., Smith J., Lechan R., Powers J., Tischler A., Grizzle W. E., Sexton K. C., Kastl A., Henderson J., Porten S., Waldmann J., Crain D., Miller C. A., Schmidt H. K., Wilson R. K., Curley E., Gardner J., Lau K., Mallery D., Morris S., Zwarthoff E. C., Oosterhuis W., Stoop H., Kessel K. E., Calatozzolo C., Cuppini L., Cuzzubbo S., Dimeco F., Kebebew E., Zaren H., Park J., Hung N. P., Linehan W. M., Metwalli A. R., Pacak K., Pinto P. A., Schiffman M., Couce M., Fassnacht M., Asa S. L., Schadendorf D., Graefen M., Huland H., Sauter G., Schlomm T., Simon R., Shelton T., Paulauskis J., Penny R., Shelton C., Sherman M., Thompson E., Yena P., Bowen J., Gastier-Foster J. M., Pollo B., Finocchiaro G., Mattei L., Perin A., Chen C., Houck J., Lohavanichbutr P., Hartmann A., Worrell R., Schmidt L. S., Vocke C. D., Wentzensen N., Yang H., Moncrieff M., Goparaju C., Melamed J., Pass H., Bathe O., Tennstedt P., Olabode O., Nelson M., Carroll P. R., Chan J. M., Disaia P., Glenn P., Kelley R. K., Ramirez N. C., Gerken M., Leraas K. M., Lichtenberg T. M., Wise L., Zmuda E., Corcoran N., Costello T., Wach S., Stoehr C., Stoehr R., Taubert H., Wullich B., Kycler W., Murawa D., Wiznerowicz M., Chung K., Chemencedji I., Botnariuc N., Caraman I., Cernat M., Clipca A., Doruc S., Gorincioi G., Mura S., Pirtac M., Simko J., Landen C. N., Phillips J., Prados M., Smith-Mccune K., Vandenberg S., Roggin K., Fehrenbach A., Kendler A., Fregnani J. H., Hovens C., Carvalho A. L., Carvalho A. C., Longatto-Filho A., Reis R. M., Scapulatempo-Neto C., Silveira H. C. S., Bubley G., Edenfield W. J., Martin J., Baudin E., Bueno R., Rienzo A., Richards W. G., Kalkanis S., Mikkelsen T., Alexopoulou I., Stancul I., Tcaciuc D., Albert M., Arnaout A., Bartlett J., Engel J., Gilbert S., Parfitt J., Carey F., Sifri S., Steele R., Jimeno A., Forgie I., Mannelli M., Carney M., Hernandez B., Campos B., Vidal D. O., Burnette A., Eschbacher J., Hermes B., Noss A., Singh R., Anderson M. L., Castro P. D., Ittmann M., Aymerich M., Noushmehr H., Scarpace L., Girard N., Campo E., Giné E., Guillermo A. L., Bang N., Hanh P. T., Rintoul R. C., Sekhon H., Thomas G., Rassl D. M., Bifulco C., Tamakawa R., Urba W., Hayward N., Timmers H., Von Deimling A., Herold-Mende C., Jungk C., Unterberg A., Bossler A., Galbraith J., Jacobus L., Knudson M., Thorp R., Huntsman D., Kohl B., Xuan L., Andry C., Duffy E. R., Lyadov V., Paklina O., Setdikova G., Evason K., Phu B. D., Tang Y., Colman H., Dottino P. R., Martignetti J. A., Gabra H., Juhl H., Akeredolu T., Driver Fusions and Their Implications in the Development and Treatment of Human Cancers
    23:1, p. 227 - 238.e3 2018
  • FASEB journal : official publication of the Federation of American Societies for Experimental Biology
    Ma Shibin, Gong Ai-Yu, Ming Zhenping, Wang Yang, Chen Xiqiang, Zhou Rui, Hu Guoku, Chen Xian-Ming, Shibata Annemarie, Swanson Patrick C, A long non-coding RNA, lincRNA-Tnfaip3, acts as a co-regulator of NF-B to modulate inflammatory gene transcription
    31:3, p. 1215 - 1225 2017
  • Cell Reports
    Haney Staci L., Klinkebiel David, Swanson Patrick, Opavsky Rene, Upchurch G. Michael, Opavska Jana, Hlady Ryan A., Suresh Abhinav, Pirruccello Samuel J., Rizzino Angie, Shukla Vipul, Lu Runqing, Costinean Stefan, Karpf Adam R., Joshi Shantaram, Promoter Hypomethylation and Expression Is Conserved in Mouse Chronic Lymphocytic Leukemia Induced by Decreased or Inactivated Dnmt3a
    15:6, p. 1190 - 1201 2016
  • Experimental Hematology
    Shukla A., Pitner M. A., Rai S., Opavsky R., Swanson Patrick C., Cutucache C. E., Sutton G. L., Joshi S. S., Absence of Caveolin-1 Leads to Delayed Development of Chronic Lymphocytic Leukemia in Emu-TCL1 Mouse Model
    44:1, p. 30 - 37.e1 2016
  • BMC Immunology
    Palmer Victoria L., Perry Greg A., Nganga Vincent K., Rothermund Mary, Swanson Patrick C., Cd1d regulates B cell development but not B cell accumulation and IL10 production in mice with pathologic CD5(+) B cell expansion
    16:66, p. (12 pages) 2015
  • Journal of Immunology
    Palmer Victoria L., Rothermund Mary, Perry Greg A., Swanson Patrick C., Kassmeier Michele D., Aziz-Seible Razia, VprBP is required for efficient editing and selection of Igκ+ B cells, but is dispensable for Igλ+ and marginal zone B cell maturation and selection
    195:4, p. 1524 - 1537 2015
  • Antioxidants and Redox Signaling
    Manning Jared, Nganga Vincent, Shakya Arvind, Pierce Laura Jean, Wang Hongfang, Swanson Patrick C., May James M., Tantin Dean, Spangrude Gerald J., Mitchell Birgitta, Appadurai Daniel A., Vitamin C promotes maturation of T-cells
    19:17, p. 2054 - 2067 2013
  • BMC Molecular Biology
    Nakagawa Tadashi, Mondal Koushik, Swanson Patrick C., VprBP (DCAF1)
    14 2013
  • Blood
    Nganga Vincent K., Perry Greg A., Palmer Victoria L., Naushad Hina, Kassmeier Michele D., Anderson Dirk K., Schabla Nathan M., Swanson Patrick C., Accelerated progression of chronic lymphocytic leukemia in Eµ-TCL1 mice expressing catalytically inactive RAG1
    121:19, p. 3855 - 3866 2013
  • Nucleic Acids Research
    Wang Guannan, Chang Yung, Dhar Kajari, Swanson Patrick C., Levitus Marcia, Real-time monitoring of RAG-catalyzed DNA cleavage unveils dynamic changes in coding end association with the coding end complex
    40:13, p. 6082 - 6096 2012
  • Molecular and Cellular Biology
    Shimazaki Noriko, Askary Amjad, Swanson C. Patrick, Lieber Michael R., Mechanistic basis for RAG discrimination between recombination
    32:2, p. 365 - 375 2012
  • Journal of Proteome Research
    Ma Danjun, Zhao Yingchun, Xiao Gary G., Swanson Patrick C., Lappe Joan M., Cullen Diane M., Akhter Mohammed P., Recker Robert R., Hackfort Bryan, Li Yan, Smoke-Induced Signal Molecules in Bone Marrow Cells from Altered Low-Density Lipoprotein Receptor-Related Protein 5 Mice
    11:7, p. 3548 - 3560 2012
  • The Journal of immunology (1950)
    Xie Wanqin, Lange Miles D, Hong Sang Yong, Huang Lin, Xue Weihua, Ding Shi-jian, Yu Yangsheng, Burrows Peter D., Lu Runqing, Swanson Patrick C., Zhang Zhixin, Su Kaihong, Jones Dallas, Yu Zhihong, He Ti, The V(D)J recombination machinery is organized as large complexes anchored on the nuclear matrix (62.1)
    186:1_Supplement, p. 62 - 62.1 2011
  • The Journal of immunology (1950)
    Bai Jirong, Xie Wanqin, Lange Miles, Hong Song Yang, Huang Lin, Chan John, Su Kaihong, Swanson Patrick, McKeithan Timothy, Zhang Zhixin, Kai Fu, Ti He, Jones Dallas, Yu Zhihong, Molecular regulation of BCL2 to IGH translocation in follicular lymphoma (165.38)
    186:1_Supplement, p. 165 - 165.38 2011
  • Immunology
    Hassaballa A. E., Volkmer D. L., Perry G. A., Swanson Patrick C., Palmer V. L., Parks K. W., Kassmeier M. D., Nganga V. K., Anderson D. K., Accumulation of B1-like B cells in transgenic mice over-expressing catalytically inactive RAG1 in the periphery
    134:4, p. 469 - 486 2011
  • PLoS One
    Palmer V. L., Swanson Patrick C., Kassmeier M. D., Willcockson J., Akhter Mohammed P., Cullen Diane M., N-Acetylcysteine Increases the Frequency of Bone Marrow Pro-B/Pre-B Cells, but Does Not Reverse Cigarette Smoking-Induced Loss of This Subset
    6:9, p. e24804 2011
  • EMBO Journal
    Kassmeier Michele D., Palmer Victoria L., Raval Prafulla, Kumar Sushil, Perry Greg A., Anderson Dirk K., Xiong Y., Jackson S., Swanson Patrick C., Ciborowski P., Mondal Koushik, VprBP binds full-length RAG1 and is required for B-cell development and V(D)J recombination fidelity
    31:4, p. 945 - 958 2011
  • Annual Review of Genetics
    Schatz David G., Swanson Patrick C., V(D)J recombination
    45, p. 167 - 202 2011
  • Inhalation Toxicology
    Fusby J. S., Kassmeier M. D., Palmer V. L., Perry G. A., Anderson D. K., Cullen Diane M., Akhter Mohammed P., Swanson Patrick C., Alvarez G. K., Hackfort B. T., Cigarette smoke-induced effects on bone marrow B-cell subsets and CD4(+):CD8(+) T-cell ratios are reversed by smoking cessation: Influence of bone mass on immune cell response to and recovery from smoke exposure
    22:9, p. 785 - 796 2010
  • The Journal of immunology (1950)
    Swanson Patrick, Palmer Victoria, Perry Greg, Anderson Dirk, Hackfort Bryan, Alvarez Gwen, Akhter Mohammed, Cullen Diane, Kassmeier Michele, Fusby Jenny, Smoking cessation reverses cigarette smoke-induced impairment of B cell development and skewed CD4:CD8 T cell ratios in mice (36.43)
    184:1_Supplement, p. 36 - 36.43 2010
  • The Journal of immunology (1950)
    Lange Miles, Xie Wanqin, Hong Sang Yong, Yu Zhihong, He Ti, Huang Lin, Yu Yangsheng, Marran-Nichol Kathleen, Swanson Patrick, Lu Runqing, Su Kaihong, Zhang Zhixin, The V(D)J recombination machinery is associated with the nuclear matrix (88.3)
    184:1_Supplement, p. 88 - 88.3 2010
  • Journal of Biological Chemistry
    Shlyakhtenko Luda S., Lyubchenko Yuri L., Gilmore Jamie, Kriatchko Aleksei N., Kumar Sushil, Swanson Patrick C., Molecular mechanism underlying RAG1/RAG2 synaptic complex formation
    284:31, p. 20956 - 20965 2009
  • Nucleic Acids Research
    Kumar Sushil, Swanson Patrick C., Full-length RAG1 promotes contact with coding and intersignal sequences in RAG protein complexes bound to recombination signals paired in cis
    37:7, p. 2211 - 2226 2009
  • BMC Molecular Biology
    Zhang Ming, Swanson Patrick C., HMGB1/2 can target DNA for illegitimate cleavage by the RAG1/2 complex
    10:1, p. 24 2009
  • Molecular Cell
    Lu Haihui, Shimazaki Noriko, Raval Prafulla, Gu Jiafeng, Watanabe Go, Schwarz Klaus, Swanson Patrick C., Lieber Michael R., A Biochemically Defined System for Coding Joint Formation in V(D)J Recombination
    31:4, p. 485 - 497 2008
  • BMC Molecular Biology
    Kriatchko Aleksei N., Bergeron Serge, Swanson Patrick C., HMG-box domain stimulation of RAG1
    9, p. 32 - 32 2008
  • Journal of Biological Chemistry
    Swanson Patrick C., V(D)J Recombinase Binding and Cleavage of Cryptic Recombination Signal Sequences Identified from Lymphoid Malignancies
    283:11, p. 6717 - 6727 2008
  • Nucleic Acids Research
    Raval Prafulla, Swanson Patrick C., Kriatchko A. N., Kumar S., Evidence for Ku70/Ku80 association with full-length RAG1, p. 2060 - 2072 2008
  • Molecular and Cellular Biology
    Ciubotaru Mihai, Kriatchko Aleksei N., Swanson Patrick C., Bright Frank V., Schatz David G., Fluorescence resonance energy transfer analysis of recombination signal sequence configuration in the RAG1/2 synaptic complex
    27:13, p. 4745 - 4758 2007
  • DNA Repair
    Raghavan Sathees C., Swanson Patrick C., Lieber Michael R., Gu Jiafeng, The structure-specific nicking of small heteroduplexes by the RAG complex
    6:6, p. 751 - 759 2007
  • The Journal of immunology (1950)
    Zhang Ming, Swanson Patrick C., Recognition and cleavage of cryptic recombination signal sequences identified from lymphoid malignancies (49.20)
    178:1_Supplement, p. S86 - S87 2007
  • The Journal of immunology (1950)
    Swanson Patrick C., Anderson Dirk K., Hassaballa Ashraf E., Parks Kevin W., Perry Greg A., Immunodeficiency and accumulation of B1-like B cells in transgenic mice overexpressing catalytically inactive RAG1 (B2)
    178:1_Supplement, p. LB1 - LB1 2007
  • Molecular and Cellular Biology
    Kriatchko Aleksei N., Anderson Dirk K., Swanson Patrick C., Identification and characterization of a gain-of-function RAG-1 mutant
    26:12, p. 4712 - 4728 2006
  • Methods in Enzymology
    Bergeron Serge, Anderson Dirk K., Swanson Patrick C., RAG and HMGB1 Proteins
    408, p. 511 - 528 2006
  • Journal of allergy and clinical immunology
    Parks K.W., Hassaballa A.E., Anderson D.K., Hu Q., Casale T.B., Swanson P.C., Transgenic Mice Expressing Catalytically Inactive RAG-1 Exhibit Hypogammaglobulinemia and Altered B Cell Development, but not Autoreactivity
    117:2, p. S100 - S100 2006
  • Journal of Biological Chemistry
    Bergeron Serge, Madathiparambil Tina, Swanson Patrick C., Both high mobility group (HMG)-boxes and the acidic tail of HMGB1 regulate recombination-activating gene (RAG)-mediated recombination signal synapsis and cleavage in vitro
    280:35, p. 31314 - 31324 2005
  • Molecular and Cellular Biology
    Raghavan Sathees C., Ma Yunmei, Swanson Patrick C., Lieber Michael R., Double-strand break formation by the RAG complex at the Bcl-2 major breakpoint region and at other non-B DNA structures in vitro
    25:14, p. 5904 - 5919 2005
  • Immunological Reviews
    Swanson Patrick C., The bounty of RAGs: recombination signal complexes and reaction outcomes
    200, p. 90 - 114 2004
  • Nature
    Raghavan Sathees C., Swanson Patrick C., Wu Xlantuo, Hsieh Chih Lin, Lieber Michael R., A non-B-DNA structure at the Bcl-2 major breakpoint region is cleaved by the RAG complex
    428:6978, p. 88 - 93 2004
  • Journal of Biological Chemistry
    Swanson Patrick C., Volkmer Dustin, Wang Lei, Full-length RAG-2, and Not Full-length RAG-1, Specifically Suppresses RAG-mediated Transposition but Not Hybrid Joint Formation or Disintegration
    279:6, p. 4034 - 4044 2004
  • Molecular and Cellular Biology
    Swanson Patrick C., A RAG-1/RAG-2 tetramer supports 12/23-regulated synapsis, cleavage, and transposition of V(D)J recombination signals (vol 22, pg 7790, 2002) Erratum
    23:8, p. 3029 - 3029 2003
  • Molecular and Cellular Biology
    Swanson Patrick C., A RAG-1/RAG/RAG-2 tetramer supports 12/23-regulated synapsis, cleavage, and transposition of V(D)J recombination signals
    22:22, p. 7790 - 7801 2002
  • Molecular and Cellular Biology
    Swanson Patrick C., Fine structure and activity of discrete RAG-HMG complexes on V(D)J recombination signals
    22:5, p. 1340 - 1351 2002
  • Molecular and Cellular Biology
    Swanson P. C., The DDE motif in RAG-1 is contributed in trans to a single active site that catalyzes the nicking and transesterification steps of V(D)J recombination
    21:2, p. 449 - 458 2001
  • Molecular and Cellular Biology
    Swanson Patrick C., Desiderio Stephen, RAG-2 promotes heptamer occupancy by RAG-1 in the assembly of a V(D)J initiation complex
    19:5, p. 3674 - 3683 1999
  • Immunity
    Swanson Patrick C., Desiderio Stephen, V(D)J recombination signal recognition
    9:1, p. 115 - 125 1998
  • Molecular and Cellular Biology
    Li Wenhui, Swanson Patrick, Desiderio Stephen, RAG-1- and RAG-2-dependent assembly of functional complexes with V(D)J recombination substrates in solution
    17:12, p. 6932 - 6939 1997
  • Journal of the American Chemical Society
    Stevens Shawn Y., Glick Gary D., Bunin Barry A., Plunkett Matthew J., Ellman Jonathan A., Swanson Patrick C., Non nucleic acid inhibitors of protein·DNA interactions identified through combinatorial chemistry
    118:43, p. 10650 - 10651 1996
  • Journal of Clinical Investigation
    Swanson Patrick C., Yung Raymond L., Blatt Neal B., Eagan Melissa A., Norris Jennifer M., Richardson Bruce C., Johnson Kent J., Glick Gary D., Ligand recognition by murine anti-DNA autoantibodies
    97:7, p. 1748 - 1760 1996
  • Biochemistry
    Swanson Patrick C., Ackroyd Christine, Glick Gary D., Ligand recognition by anti-DNA autoantibodies. Affinity, specificity, and mode of binding
    35:5, p. 1624 - 1633 1996
  • Journal of Immunological Methods
    Stevens Shawn Y., Swanson Patrick C., Glick Gary D., Application of the gel shift assay to study the affinity and specificity of anti-DNA autoantibodies
    177:1-2, p. 185 - 190 1994
  • Tetrahedron Letters
    Goodwin Jay T., Osborne Scott E., Swanson Patrick C., Glick Gary D., Synthesis of a disulfide cross-linked DNA triple helix
    35:26, p. 4527 - 4530 1994
  • Journal of Immunology
    Swanson Patrick C., Cooper Brian C., Glick Gary D., High resolution epitope mapping of an anti-DNA autoantibody using model DNA ligands
    152:5, p. 2601 - 2612 1994
  • Bioorganic and Medicinal Chemistry Letters
    Swanson Patrick C., Glick Gary D., Chemical sequencing of disulfide-crosslinked oligodeoxyribonucleotides
    3:10, p. 2117 - 2118 1993
  • Journal of the American Chemical Society
    Stevens Shawn Y., Swanson Patrick C., Glick Gary D., Voss Edward W., Evidence for Induced Fit in Antibody-DNA Complexes
    115:4, p. 1585 - 1586 1993